KG.nt contains the output graph from PheKnowLator. nodes.pkl and edges.pkl contain the types of nodes and edges, and are the required inputs by GRAPE in the from_pandas method.

Link prediction should be conducted on triples contained in the following test sets:

miRNA-disease2bepred.txt
SPIRES_TP.txt
SPIRES_FP.txt
SPIRES_FN.txt

Additionally, there is a file 'test-.txt' for this view. In this file, you will find a column 'RNADisease score' with the scores (always below 0.45, used as a threshold) assigned by the source itself to its triples. Since they have a low score and are therefore excluded from RNA-KG, we want to verify if the relationship does not exist, or if further experiments might confirm these relationships, thereby increasing their scores.